Intro
About PseudoBase Retrieve by class or by by property Submit Pseudoknots
BYDV-NY-RPV

PKB-number: PKB46
Definition: ORF2/ORF3 (putative RNA-dependent RNA polymerase) ribosomal frameshift site of barley yellow dwarf virus, NY-RPV isolate
Organism: barley yellow dwarf virus
Abbreviation: BYDV-NY-RPV
RNA type: Viral Frameshift
Keywords: luteovirus; ribosomal frameshifting; RNA polymerase
EMBL number: L25299
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Sequence comparison
References: [1] Vincent JR et al. J.Gen.Virol. 1991, 72:2347-2355
[2] ten Dam EB. (1995). Ph.D.Thesis, Leiden University.
Stem sizes:
Loop sizes:
5 4
2 0 7
Position Paired:
1706-1710; 1717-1721
1713-1716; 1729-1732
Bracket view of structure:
               1700      1710      1720      1730
     #      456789|123456789|123456789|123456789|12
     $ 1694 GGGAAACGGGAAGGCGGCGGCGUCCGCCGUAACAAACGC=1732
     % 1694 ::::::::::::(((((::[[[[))))):::::::]]]]

Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-5-12 PKB00046.html