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About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
PMMV-S_PKbulge |
PKB-number: | PKB143 |
Definition: | tRNA-like structure bulge pseudoknot of pepper mild mottle virus, Spanish isolate |
Organism: | pepper mild mottle virus |
Abbreviation: | PMMV-S_PKbulge |
RNA type: | Viral tRNA-like |
Keywords: | tobamovirus; RNA 3'end |
EMBL number: | M81413 |
Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
Supported by: | Sequence comparison |
References: |
[1] Avila-Rincon M.J. et al. (1989). J. Gen. Virol. 70:3025-3031.
[2] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324. |
Stem sizes: Loop sizes: |
7 5 4 33 8 |
Position Paired: | 6251-6257; 6300-6306 6267-6269; 6297-6299 6274-6282; 6288-6296 6262-6266; 6315-6319 |
Bracket view of structure: |
6250 6260 6270 6280 6290 6300 6310 6320 # |123456789|123456789|123456789|123456789|123456789|123456789|123456789| $ 6250 UUGUCGUUGGGAUGGAACGCAAUUAAAUACAUGUGUGACGUGUAUUUGCGAACGACGUAAUUAUUUUUCAG=6320 % 6250 :(((((((::::[[[[[(((::::(((((((((:::::)))))))))))))))))))::::::::]]]]]: