Intro
About PseudoBase Retrieve by class or by by property Submit Pseudoknots
PMMV-S_PKbulge

PKB-number: PKB143
Definition: tRNA-like structure bulge pseudoknot of pepper mild mottle virus, Spanish isolate
Organism: pepper mild mottle virus
Abbreviation: PMMV-S_PKbulge
RNA type: Viral tRNA-like
Keywords: tobamovirus; RNA 3'end
EMBL number: M81413
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Sequence comparison
References: [1] Avila-Rincon M.J. et al. (1989). J. Gen. Virol. 70:3025-3031.
[2] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324.
Stem sizes:
Loop sizes:
7 5
4 33 8
Position Paired:
6251-6257; 6300-6306
6267-6269; 6297-6299
6274-6282; 6288-6296
6262-6266; 6315-6319
Bracket view of structure:
         6250      6260      6270      6280      6290      6300      6310      6320
     #      |123456789|123456789|123456789|123456789|123456789|123456789|123456789|
     $ 6250 UUGUCGUUGGGAUGGAACGCAAUUAAAUACAUGUGUGACGUGUAUUUGCGAACGACGUAAUUAUUUUUCAG=6320
     % 6250 :(((((((::::[[[[[(((::::(((((((((:::::)))))))))))))))))))::::::::]]]]]:

Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-10-8 PKB00143.html