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HiPV_IRES-PKII

PKB-number: PKB214
Definition: Pseudoknot PKII of the internal ribosomal entry site (IRES) region
Organism: Himetobi P virus
Abbreviation: HiPV_IRES-PKII
RNA type: Viral others
Keywords: Picornaviridae; Internal ribosomal entry site (IRES); Translation; Cricket paralysis-like virus
EMBL number: AB017037
Submitted by: A.P. Gultyaev ( gultyaev@rulsfb.LeidenUniv.nl)
Supported by: Sequence comparison
References: [1] Kanamori Y. & Nakashima N. (2001). RNA 7:266-274.
Stem sizes:
Loop sizes:
19 5
8 6 67
Position Paired:
6286-6294; 6346-6354
6302-6311; 6331-6340
6320-6324; 6422-6426
Bracket view of structure:
               6290      6300      6310      6320      6330
      #      56789|123456789|123456789|123456789|123456789|1234
      $ 6285 CGAAAAUGUGUGAUCUGAUUAGAAGUAAGAAAAUUCCUAGUUAUAAUAUU=6334
      % 6285 :(((((((((:::::::((((((((((::::::::[[[[[::::::))))
               6340      6350
      #      56789|123456789|12345(64)
      $ 6335 UUUAAUACUGCUACAUUUUUA=6355
      % 6335 )))))):::::))))))))):
           6420
      # (64) |123456789
      $ 6420 ACCUAGGUGC=6429
      % 6420 ::]]]]]:::

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