PKB-number: |
PKB214
|
Definition: |
Pseudoknot PKII of the internal ribosomal entry site (IRES) region
|
Organism: |
Himetobi P virus
|
Abbreviation: |
HiPV_IRES-PKII
|
RNA type: |
Viral others
|
Keywords: |
Picornaviridae;
Internal ribosomal entry site (IRES);
Translation;
Cricket paralysis-like virus
|
EMBL number: |
AB017037
|
Submitted by: |
A.P. Gultyaev
(
gultyaev@rulsfb.LeidenUniv.nl)
|
Supported by: |
Sequence comparison
|
References: |
[1] Kanamori Y. & Nakashima N. (2001). RNA 7:266-274.
|
Stem sizes: Loop sizes: |
19 5
8 6 67 |
Position Paired: |
6286-6294; 6346-6354
6302-6311; 6331-6340
6320-6324; 6422-6426 |
Bracket view of structure:
|
6290 6300 6310 6320 6330
# 56789|123456789|123456789|123456789|123456789|1234
$ 6285 CGAAAAUGUGUGAUCUGAUUAGAAGUAAGAAAAUUCCUAGUUAUAAUAUU=6334
% 6285 :(((((((((:::::::((((((((((::::::::[[[[[::::::))))
6340 6350
# 56789|123456789|12345(64)
$ 6335 UUUAAUACUGCUACAUUUUUA=6355
% 6335 )))))):::::))))))))):
6420
# (64) |123456789
$ 6420 ACCUAGGUGC=6429
% 6420 ::]]]]]:::
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2001-5-17 PKB00214.html