| PKB-number: |
PKB269
|
| Definition: |
A 3'-terminal pseudoknot in CTV
|
| Organism: |
citrus tristeza virus
|
| Abbreviation: |
CTV
|
| RNA type: |
Viral 3 UTR
|
| Keywords: |
Closteroviridae; Closterovirus
|
| EMBL number: |
U16304
|
| Submitted by: |
A.P. Gultyaev
(
a.p.gultyaev@biology.leidenuniv.nl)
|
| Supported by: |
Sequence comparison; |
| References: |
[1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
|
| Comment: |
Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses [1].
|
Stem sizes:
Loop sizes: |
7 5
33 0 4 |
| Position Paired: |
19232-19238; 19277-19283
19246-19253; 19260-19267
19272-19276; 19288-19292 |
| Bracket view of structure:
|
19240 19250 19260 19270 19280 19290
# 123456789|123456789|123456789|123456789|123456789|123456789|123456
$ 19231 AGUUCUCCUUAGAGUGUGUGUUGUUUACCCAACGCACUGUCCCUAUGGGGGGCCAACAUAGGUCCA=19296
% 19231 :(((((((:::::::((((((((::::::))))))))::::[[[[[)))))))::::]]]]]::::
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2007-5-17 PKB00269.html
