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About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
USUV |
PKB-number: | PKB351 |
Definition: | NS1' ribosomal frameshift site of Usutu virus |
Organism: | Usutu virus |
Abbreviation: | USUV |
RNA type: | Viral Frameshift |
Keywords: | Flaviviridae; ribosomal frameshifting |
EMBL number: | NC_006551 |
Submitted by: | A.P. Gultyaev (goultiaevap2@chem.leidenuniv.nl) |
Supported by: | Mutagenesis,Sequence comparison |
References: |
[1] Firth AE & Atkins JF (2009). Virol. J. 6:14.
[2] Melian EB et al. (2010). J. Virol. 84:1641-1647. |
Comment: | |
Stem sizes: Loop sizes: |
11 7 7 2 16 |
Position Paired: | 3564-3574; 3591-3601 |
Bracket view of structure: |
3560 3570 3580 3590 3600 3610 # 123456789|123456789|123456789|123456789|123456789|123456789| $ 3551 AUCCUUUUCAGUUGGGCCUUCUGGUGAUGUUUCUGGCCACCCAGGAGGUCCUGAGGAAGA=3610 % 3551 :::::::::::::(((((((((((:::::::[[[[[[[::)))))))))))::::::::: 3620 3630 # 123456789|123456789| $ 3611 GGUGGACGGCCAGAUUGACU=3630 % 3611 :::::::]]]]]]]::::::