Intro
About PseudoBase Retrieve by class or by by property Submit Pseudoknots
USUV

PKB-number: PKB351
Definition: NS1' ribosomal frameshift site of Usutu virus
Organism: Usutu virus
Abbreviation: USUV
RNA type: Viral Frameshift
Keywords: Flaviviridae; ribosomal frameshifting
EMBL number: NC_006551
Submitted by: A.P. Gultyaev (goultiaevap2@chem.leidenuniv.nl)
Supported by: Mutagenesis,Sequence comparison
References: [1] Firth AE & Atkins JF (2009). Virol. J. 6:14.
[2] Melian EB et al. (2010). J. Virol. 84:1641-1647.
Comment:
Stem sizes:
Loop sizes:
11 7
7 2 16
Position Paired:
3564-3574; 3591-3601
3582-3588; 3618-3624
Bracket view of structure:
             3560      3570      3580      3590      3600      3610
#      123456789|123456789|123456789|123456789|123456789|123456789|
$ 3551 AUCCUUUUCAGUUGGGCCUUCUGGUGAUGUUUCUGGCCACCCAGGAGGUCCUGAGGAAGA=3610
% 3551 :::::::::::::(((((((((((:::::::[[[[[[[::))))))))))):::::::::

             3620      3630
#      123456789|123456789|
$ 3611 GGUGGACGGCCAGAUUGACU=3630
% 3611 :::::::]]]]]]]::::::


Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2011-4-23 PKB00351.HTML