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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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CSFV_IRES |  |
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| PKB-number: | PKB209 |
| Definition: | IRES domain IIIef |
| Organism: | Classical swine fever virus (hog cholera virus) |
| Abbreviation: | CSFV_IRES |
| RNA type: | Viral 5 UTR |
| Keywords: | flaviviridae; pestivirus; translation; internal ribosomal entry site (IRES) |
| EMBL number: | M31768 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Mutagenesis; Sequence comparison; Structure probing |
| References: |
[1] Brown E.A. et al. (1992). Nucleic Acids Res. 20:5041-5045.
[2] Wang C. et al. (1995). RNA 1:526-537. [3] Rijnbrand R. et al. (1997). J. Virol. 71:451-457. [4] Kolupaeva V.G. et al. (2000). RNA 6:1791-1807. |
| Stem sizes: Loop sizes: |
14 7 179 1 7 |
| Position Paired: | 118-124; 328-334 125-131; 319-325 132-133; 294-295 296-299; 304-307 311-317; 342-348 |
| Bracket view of structure: |
120 130
# 789|123456789|1234(158)
$ 117 GACUAGCCGUAGUGGCGA=134
% 117 :((((((((((((((((:
300 310 320 330 340 350
#(158)3456789|123456789|123456789|123456789|123456789|123456789|
$ 293 ACGACCUGAUAGGGUGCUGCAGAGGCCCACUAUUAGGCUAGUAUAAAAAUCUCUGCUG=350
% 293 :))((((::::)))):::[[[[[[[:)))))))::))))))):::::::]]]]]]]::