| PKB-number: |
PKB310
|
| Definition: |
Regulatory pseudoknot of the interferon-gamma gene 5'-UTR
|
| Organism: |
Canis familiaris (dog)
|
| Abbreviation: |
IFNG_PK_C_familiaris
|
| RNA type: |
mRNA
|
| Keywords: |
translation; PKR
|
| EMBL number: |
NW_876250
|
| Submitted by: |
A.P. Gultyaev
(a.p.gultyaev@biology.leidenuniv.nl)
|
| Supported by: |
Mutagenesis,Sequence comparison,Structure probing
|
| References: |
[1] Cohen-Chalamish S. et al. (2009). Nature Chem. Biol. 5:896-903.
|
| Comment: |
This pseudoknot can adopt alternative conformations, conserved in mammalian IFN-gamma mRNA�s [1]. Here the numbering corresponds to the structure as given in [1] and differs from the database entry for genomic contig (NW_876250).
|
Stem sizes:
Loop sizes: |
6 33
0 2 6
|
| Position Paired: |
9 -14 ; 64 -69
15 -16 ; 117-118
18 -18 ; 116-116
20 -20 ; 114-114
21 -24 ; 109-112
25 -28 ; 104-107
32 -33 ; 100-101
35 -35 ; 98 -98
38 -42 ; 92 -96
44 -47 ; 87 -90
51 -53 ; 83 -85
56 -61 ; 76 -81
|
