PKB-number: |
PKB355
|
Definition: |
R2 ribozyme
|
Organism: |
Drosophila yakuba
|
Abbreviation: |
R2_rz_Dy
|
RNA type: |
Ribozymes
|
Keywords: |
self-cleavage; hepatitis delta virus ribozyme; HDV-like ribozyme
|
EMBL number: |
U64961
|
Submitted by: |
A.P. Gultyaev
(goultiaevap2@chem.leidenuniv.nl)
|
Supported by: |
Sequence comparison,ribozyme activity
|
References: |
[1] Eickbush DG & Eickbush TH (2010). Mol. Cell. Biol. 30: 3142-3150.
|
Stem sizes: Loop sizes: |
7 6 3 2 74 0 1 4 0
|
Position Paired: |
2 -8 ; 102-108 83 -88 ; 137-142 89 -91 ; 99 -101 93 -94 ; 109-110 113-120; 125-132
|
Bracket view of structure:
|
10 20 30 40 50
# 123456789|123456789|123456789|123456789|123456789|
$ 1 GGGGAAACAUGGGGUAAAGGUGAGUAGAGGGGGAGUAUUUUUAUACUCUG=50
% 1 :(((((((::::::::::::::::::::::::::::::::::::::::::
60 70 80 90 100
# 123456789|123456789|123456789|123456789|123456789|
$ 51 CAACUCAUAAGUCUUGCCUUUACUCAAGUCGACUCAAAACCUCCUCGUGG=100
% 51 ::::::::::::::::::::::::::::::::[[[[[[(((:[[::::))
110 120 130 140 150
# 123456789|123456789|123456789|123456789|123456789|
$ 101 UGUUUCCCGGUAAUGUUAAACUUGUUUAGCAGCUAAUUUGAGCGGCGAAU=150
% 101 ))))))))]]::((((((((::::))))))))::::]]]]]]::::::::
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2011-4-25 PKB00355.HTML