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R2_rz_Dy
PKB-number: PKB355
Definition: R2 ribozyme
Organism: Drosophila yakuba
Abbreviation: R2_rz_Dy
RNA type: Ribozymes
Keywords: self-cleavage; hepatitis delta virus ribozyme; HDV-like ribozyme
EMBL number: U64961
Submitted by: A.P. Gultyaev (goultiaevap2@chem.leidenuniv.nl)
Supported by: Sequence comparison,ribozyme activity
References: [1] Eickbush DG & Eickbush TH (2010). Mol. Cell. Biol. 30: 3142-3150.
Stem sizes:
Loop sizes:		 7 6 3 2
74 0 1 4 0
Position Paired: 
2  -8  ; 102-108
83 -88 ; 137-142
89 -91 ; 99 -101
93 -94 ; 109-110
113-120; 125-132
Bracket view of structure: 
            10        20        30        40        50
#   123456789|123456789|123456789|123456789|123456789|
$ 1 GGGGAAACAUGGGGUAAAGGUGAGUAGAGGGGGAGUAUUUUUAUACUCUG=50
% 1 :(((((((::::::::::::::::::::::::::::::::::::::::::

             60        70        80        90       100
#    123456789|123456789|123456789|123456789|123456789|
$ 51 CAACUCAUAAGUCUUGCCUUUACUCAAGUCGACUCAAAACCUCCUCGUGG=100
% 51 ::::::::::::::::::::::::::::::::[[[[[[(((:[[::::))

             110       120       130       140       150
#     123456789|123456789|123456789|123456789|123456789|
$ 101 UGUUUCCCGGUAAUGUUAAACUUGUUUAGCAGCUAAUUUGAGCGGCGAAU=150
% 101 ))))))))]]::((((((((::::))))))))::::]]]]]]::::::::
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