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LiRMV3

PKB-number: PKB392
Definition: tRNA-like structure pseudoknot of RNA3
Organism: Lilac ring mottle virus
Abbreviation: LiRMV3
RNA type: Viral tRNA-like
Keywords: Bromoviridae; Ilarvirus
EMBL number: U17391
Submitted by: A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by: Sequence comparison
References: [1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864.
[2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes:
Loop sizes:
13 4
7 0 64
Position Paired:
2161-2167; 2209-2215
2171-2176; 2188-2193
2194-2198; 2203-2207
2218-2224; 2229-2235
2240-2247; 2261-2268
2248-2251; 2256-2259
2184-2187; 2280-2283
Bracket view of structure:
             2170      2180      2190      2200      2210      2220
#      123456789|123456789|123456789|123456789|123456789|123456789|
$ 2161 GUUUGUAUUCCGACUGUUUGUUUCUCCCAGUCGAUGCCUGUUGGUGUUUACAGACGAGUA=2220
% 2161 (((((((:::((((((:::::::[[[[))))))(((((::::))))):)))))))::(((

             2230      2240      2250      2260      2270      2280
#      123456789|123456789|123456789|123456789|123456789|123456789|
$ 2221 UGGUAUUGACCAUAUGUUCCUAUUCUCUCUCUCAGGAGAGGAGAAUAGAUGCCUCCAAAG=2280
% 2221 ((((::::)))))))::::((((((((((((::::)))):)))))))):::::::::::]


#      1234567
$ 2281 GAGUCGC=2287
% 2281 ]]]::::


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© final design and maintenance: F.H.D.(Eke) van Batenburg; 2014-11-28 PKB00392.HTML