Intro
About PseudoBase Retrieve by class or by by property Submit Pseudoknots
ApMV3

PKB-number: PKB397
Definition: tRNA-like structure pseudoknot of RNA3
Organism: Apple mosaic virus
Abbreviation: ApMV3
RNA type: Viral tRNA-like
Keywords: Bromoviridae; Ilarvirus
EMBL number: NC_003480
Submitted by: A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by: Sequence comparison
References: [1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864.
[2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes:
Loop sizes:
13 6
1 2 56
Position Paired:
1953-1959; 1987-1993
1961-1962; 1984-1985
1963-1966; 1976-1979
1996-2001; 2008-2013
2018-2025; 2031-2038
1968-1973; 2050-2055
Bracket view of structure:
             1960      1970      1980      1990      2000      2010
#      123456789|123456789|123456789|123456789|123456789|123456789|12345
$ 1951 CAGUUUUCCGAGCGUCGCCUCCUUAGGCGUGUCCUAGGAAAACAACAACUCGAUGUAGAGUUGAU=2015
% 1951 ::(((((((:((((((:[[[[[[::))))::::)):)))))))::((((((::::::))))))::

        2020      2030      2040      2050
#      6789|123456789|123456789|123456789|123456
$ 2016 UCCAAUUUCUGUGAAAGAAAUUGAUGCCCCGAUUAGGAGGC=2056
% 2016 ::((((((((:::::)))))))):::::::::::]]]]]]:


Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2014-11-28 PKB00397.HTML