| PKB-number: |
PKB229
|
| Definition: |
Pseudoknot PKIII of the internal ribosomal entry site (IRES) region
|
| Organism: |
Black queen cell virus
|
| Abbreviation: |
BQCV_IRES-PKIII
|
| RNA type: |
Viral others
|
| Keywords: |
Picornaviridae;
Internal ribosomal entry site (IRES);
Translation;
Cricket paralysis-like virus
|
| EMBL number: |
AF183905
|
| Submitted by: |
A.P. Gultyaev
(
gultyaev@rulsfb.LeidenUniv.nl)
|
| Supported by: |
Sequence comparison
|
| References: |
[1] Kanamori Y. & Nakashima N. (2001). RNA 7:266-274.
|
Stem sizes:
Loop sizes: |
4 8
19 1 18 |
| Position Paired: |
5721-5724; 5754-5757
5727-5730; 5735-5738
5744-5747; 5781-5784
5749-5752; 5776-5779
5758-5762; 5768-5772 |
| Bracket view of structure:
|
5720 5730 5740 5750 5760 5770 5780
# 9|123456789|123456789|123456789|123456789|123456789|123456789|12345
$ 5719 AUCACCGUACCUAUUUAGGUUUACGCUCCAAGAUCGGUGGAUAGCAGCCCUAUCAAUAUCUAGGAGA=5785
% 5719 ::((((::((((::::)))):::::[[[[:[[[[:))))(((((:::::))))):::]]]]:]]]]:
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2001-5-17 PKB00229.html
