| PKB-number: |
PKB238
|
| Definition: |
A pseudoknot in the 3'-UTR
|
| Organism: |
Dengue virus type 2
|
| Abbreviation: |
DEN2_PK1
|
| RNA type: |
Viral 3 UTR
|
| Keywords: |
Flaviviridae; Dengue virus
|
| EMBL number: |
M29095
|
| Submitted by: |
A.P. Gultyaev
(
gultyaev@rulsfb.LeidenUniv.nl)
|
| Supported by: |
Sequence comparison; |
| References: |
[1] Olsthoorn R.C.L. & Bol J.F. (2001). RNA 7:1370-1377.
|
| Comment: |
A duplication of this pseudoknot is possible in the upstream region, with some nucleotide substitutions. Similar pseudoknots can be folded in other flaviviruses [1].
|
Stem sizes:
Loop sizes: |
16 5
3 1 9 |
| Position Paired: |
10540-10545; 10602-10607
10546-10547; 10580-10581
10551-10558; 10568-10575
10588-10591; 10598-10601
10562-10566; 10617-10621 |
